Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773591

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773591


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M218Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000237663 DNAJC19P7 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 7 3.3219 0.0000
2 ENSG00000221545 MIR1255B2 microRNA 1255b-2 3.0000 0.0000
3 ENSG00000235133 RPL35AP22 ribosomal protein L35a pseudogene 22 3.0000 0.0000
4 ENSG00000090104 RGS1 regulator of G protein signaling 1 2.8074 0.0000
5 ENSG00000214073 RPL21P17 ribosomal protein L21 pseudogene 17 2.8074 0.0000
6 ENSG00000233994 GDI2P2 GDP dissociation inhibitor 2 pseudogene 2 2.8074 0.0000
7 ENSG00000256285 OSBPL9P5 oxysterol binding protein like 9 pseudogene 5 2.8074 0.0000
8 ENSG00000265885 RN7SL783P RNA, 7SL, cytoplasmic 783, pseudogene 2.7740 0.0000
9 ENSG00000278206 novel transcript 2.6962 0.0000
10 ENSG00000271793 novel protein, SYNCRIP-SNX14 readthrough 2.6923 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000242888 ribosomal protein S2 (RPS2) pseudogene -2.4610 0.0000
63172 ENSG00000170275 CRTAP cartilage associated protein -2.4610 0.0000
63171 ENSG00000168273 SMIM4 small integral membrane protein 4 -2.4608 0.0000
63170 ENSG00000162772 ATF3 activating transcription factor 3 -2.4608 0.0000
63169 ENSG00000168936 TMEM129 transmembrane protein 129, E3 ubiquitin ligase -2.4606 0.0000
63168 ENSG00000180834 MAP6D1 MAP6 domain containing 1 -2.4604 0.0000
63167 ENSG00000206013 IFITM5 interferon induced transmembrane protein 5 -2.4601 0.0000
63166 ENSG00000248916 NUP210P3 nucleoporin 210 pseudogene 3 -2.4601 0.0000
63165 ENSG00000180739 S1PR5 sphingosine-1-phosphate receptor 5 -2.4599 0.0000
63164 ENSG00000228998 PERP, TP53 apoptosis effector (PERP) pseudogene -2.4594 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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