Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773592

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773592


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M219Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 4.0683 0.0000
2 ENSG00000218175 ribosomal protein, large, P1 (RPLP1) pseudogene 3.6585 0.0000
3 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 3.6349 0.0000
4 ENSG00000284135 MIR3654 microRNA 3654 3.5183 0.0000
5 ENSG00000214110 LDHAP4 lactate dehydrogenase A pseudogene 4 3.4771 0.0000
6 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 3.3655 0.0000
7 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 3.3474 0.0000
8 ENSG00000229132 EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 3.2549 0.0000
9 ENSG00000259169 GNRHR2P1 GNRHR2 pseudogene 1 3.2397 0.0000
10 ENSG00000234122 TRBV22OR9-2 T cell receptor beta variable 22/OR9-2 (pseudogene) 3.2197 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000123095 BHLHE41 basic helix-loop-helix family member e41 -1.3186 0.0000
63172 ENSG00000164197 RNF180 ring finger protein 180 -1.3181 0.0000
63171 ENSG00000272341 novel transcript -1.3180 0.0000
63170 ENSG00000164778 EN2 engrailed homeobox 2 -1.3177 0.0000
63169 ENSG00000201725 RNU6-304P RNA, U6 small nuclear 304, pseudogene -1.3171 0.0000
63168 ENSG00000248092 NNT-AS1 NNT antisense RNA 1 -1.3171 0.0000
63167 ENSG00000169884 WNT10B Wnt family member 10B -1.3169 0.0000
63166 ENSG00000085491 SLC25A24 solute carrier family 25 member 24 -1.3168 0.0000
63165 ENSG00000016082 ISL1 ISL LIM homeobox 1 -1.3166 0.0000
63164 ENSG00000128652 HOXD3 homeobox D3 -1.3166 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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