Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773593

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773593


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M220Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
2 ENSG00000249837 novel transcript 3.0000 0.0000
4 ENSG00000236958 novel transcript 2.8074 0.0000
5 ENSG00000242068 ring finger protein 13 (RNF13) pseudogene 2.8074 0.0000
6 ENSG00000249568 novel transcript 2.8074 0.0000
7 ENSG00000251816 RNA5SP157 RNA, 5S ribosomal pseudogene 157 2.8074 0.0000
8 ENSG00000259032 ENSAP2 endosulfine alpha pseudogene 2 2.8074 0.0000
9 ENSG00000267627 novel transcript 2.8074 0.0000
10 ENSG00000274631 IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) (IMMP1L) pseudogene 2.8074 0.0000
63164 ENSG00000181751 MACIR macrophage immunometabolism regulator -2.0553 0.0000
63165 ENSG00000105784 RUNDC3B RUN domain containing 3B -2.0555 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000244502 HDAC11-AS1 HDAC11 antisense RNA 1 -2.0568 0.0000
63172 ENSG00000170458 CD14 CD14 molecule -2.0567 0.0000
63171 ENSG00000258355 novel transcript, sense intronic to CKAP4 -2.0566 0.3807
63170 ENSG00000258233 ARHGAP42P5 ARHGAP42 pseudogene 5 -2.0566 0.6219
63169 ENSG00000257644 fatty acyl CoA reductase 2 (FAR2) pseudogene -2.0566 0.6219
63168 ENSG00000257504 LINC02297 long intergenic non-protein coding RNA 2297 -2.0566 0.6219
63167 ENSG00000234797 RPS3AP6 RPS3A pseudogene 6 -2.0560 0.1034
63166 ENSG00000281160 novel transcript, antisense to CCK -2.0559 0.0000
63165 ENSG00000105784 RUNDC3B RUN domain containing 3B -2.0555 0.0000
63164 ENSG00000181751 MACIR macrophage immunometabolism regulator -2.0553 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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