Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773594

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773594


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M221Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000237381 NT5DC1P1 NT5DC1 pseudogene 1 2.0000 0.0038
2 ENSG00000241815 retinoblastoma binding protein 4 (RBBP4) pseudogene 1.5850 0.0244
3 ENSG00000252854 RN7SKP5 RN7SK pseudogene 5 1.3620 0.0000
4 ENSG00000265165 MIR4307 microRNA 4307 1.2925 0.0038
5 ENSG00000223809 novel transcript 1.2340 0.0000
6 ENSG00000199246 RNU6-896P RNA, U6 small nuclear 896, pseudogene 1.2264 0.0000
7 ENSG00000234158 RPEP2 ribulose-5-phosphate-3-epimerase pseudogene 2 1.1742 0.0000
8 ENSG00000259388 ring finger protein, LIM domain interacting (RLIM) pseudogene 1.1597 0.0000
9 ENSG00000280379 novel transcript 1.1170 0.0000
10 ENSG00000279000 OR10A6 olfactory receptor family 10 subfamily A member 6 (gene/pseudogene) 1.0585 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000267783 novel transcript, antisense to ASF1B -1.8133 0.0000
63172 ENSG00000159761 C16orf86 chromosome 16 open reading frame 86 -1.8129 0.0000
63171 ENSG00000283075 novel transcript -1.8126 0.0000
63170 ENSG00000258413 novel transcript -1.8119 0.0000
63169 ENSG00000153165 RGPD3 RANBP2 like and GRIP domain containing 3 -1.8117 0.0000
63168 ENSG00000267493 CIRBP-AS1 CIRBP antisense RNA 1 -1.8116 0.0000
63167 ENSG00000160606 TLCD1 TLC domain containing 1 -1.8114 0.0000
63166 ENSG00000235173 HGH1 HGH1 homolog -1.8113 0.0000
63165 ENSG00000237172 B3GNT9 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 -1.8112 0.0000
63164 ENSG00000276406 novel transcript -1.8105 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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