Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773595

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773595


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M222Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000261081 amyloid beta (A4) precursor protein-binding, family A, member 2 (APBA2) pseudogene 2.0000 0.0000
2 ENSG00000264131 novel transcript 2.0000 0.0035
3 ENSG00000249038 AARS1P1 alanyl-tRNA synthetase 1 pseudogene 1 1.8617 0.0000
4 ENSG00000256981 taste receptor, type 2, member 18 pseudogene 1.6610 0.0001
5 ENSG00000218410 pseudogene similar to primate FRD envelope proteins (ENVFRD) 1.5850 0.0232
6 ENSG00000241723 ribosomal protein L15 (RPL15) pseudogene 1.5850 0.0000
7 ENSG00000259149 novel transcript 1.5850 0.0232
8 ENSG00000219627 CYCSP17 CYCS pseudogene 17 1.4783 0.0000
9 ENSG00000238122 novel transcript 1.4680 0.0000
10 ENSG00000271679 LSM1P2 LSM1 homolog, mRNA degradation associated pseudogene 2 1.3397 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000149212 SESN3 sestrin 3 -1.8317 0.0000
63172 ENSG00000226389 MAPK6P6 mitogen-activated protein kinase 6 pseudogene 6 -1.8315 0.0000
63171 ENSG00000261447 novel transcript -1.8313 0.0000
63170 ENSG00000254578 novel transcript, antisense to CYHR1 -1.8307 0.0000
63169 ENSG00000184451 CCR10 C-C motif chemokine receptor 10 -1.8305 0.0000
63168 ENSG00000188290 HES4 hes family bHLH transcription factor 4 -1.8302 0.0000
63167 ENSG00000279284 TEC gene -1.8299 0.0000
63166 ENSG00000183734 ASCL2 achaete-scute family bHLH transcription factor 2 -1.8299 0.0000
63165 ENSG00000274310 SRY (sex determining region Y)-box 17 (SOX17) pseudogene -1.8297 0.0000
63164 ENSG00000230778 ANKRD63 ankyrin repeat domain 63 -1.8295 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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