Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773596

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773596


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M223Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000253401 VTA1P2 vesicle trafficking 1 pseudogene 2 2.5850 0.0000
2 ENSG00000124657 OR2B6 olfactory receptor family 2 subfamily B member 6 2.3219 0.0004
3 ENSG00000249564 novel pseudogene 2.3219 0.0004
4 ENSG00000266126 novel transcript 2.2925 0.0000
5 ENSG00000241406 RN7SL515P RNA, 7SL, cytoplasmic 515, pseudogene 2.1610 0.0000
6 ENSG00000227965 LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) (LSM5) pseudogene 2.0572 0.0000
7 ENSG00000199455 RNA5SP191 RNA, 5S ribosomal pseudogene 191 2.0000 0.0000
8 ENSG00000201892 Y RNA 2.0000 0.0000
9 ENSG00000204021 LIPK lipase family member K 2.0000 0.0029
10 ENSG00000222078 RN7SKP110 RN7SK pseudogene 110 2.0000 0.0029

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000263643 MIR4515 microRNA 4515 -1.8770 0.0000
63172 ENSG00000233108 GLCCI1-DT GLCCI1 divergent transcript -1.8770 0.0000
63171 ENSG00000140274 DUOXA2 dual oxidase maturation factor 2 -1.8768 0.0000
63170 ENSG00000227542 novel transcript -1.8768 0.0000
63169 ENSG00000260464 novel transcript -1.8765 0.0000
63168 ENSG00000277119 NA -1.8765 0.0000
63167 ENSG00000273908 NA -1.8765 0.0000
63166 ENSG00000259498 TPM1-AS TPM1 antisense RNA -1.8763 0.0000
63165 ENSG00000178814 OPLAH 5-oxoprolinase, ATP-hydrolysing -1.8763 0.0000
63164 ENSG00000165169 DYNLT3 dynein light chain Tctex-type 3 -1.8761 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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