Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773597

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773597


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M224Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000222921 RNA5SP104 RNA, 5S ribosomal pseudogene 104 2.7459 0.0000
2 ENSG00000249839 histidine acid phosphatase domain containing 2A (HISPPD2A) pseudogene 2.5850 0.0001
3 ENSG00000277914 DDX6P2 DEAD-box helicase 6 pseudogene 2 2.5850 0.0001
4 ENSG00000201491 RNU4-75P RNA, U4 small nuclear 75, pseudogene 2.3219 0.0000
5 ENSG00000221245 NA 2.3219 0.0000
6 ENSG00000270323 CTAGE family, member 5 (CTAGE5) pseudogene 2.3219 0.0000
7 ENSG00000223738 heat shock protein 90kDa alpha (cytosolic), class B member 1 (HSP90AB1) pseudogene 2.2759 0.0000
8 ENSG00000224698 novel transcript 2.0000 0.0050
9 ENSG00000238118 SLC25A24P2 SLC25A24 pseudogene 2 2.0000 0.0050
10 ENSG00000241667 novel transcript 2.0000 0.0050

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000150051 MKX mohawk homeobox -1.8500 0.0000
63172 ENSG00000265445 novel transcript -1.8494 0.0000
63171 ENSG00000234676 IFT74-AS1 IFT74 antisense RNA 1 -1.8492 0.0000
63170 ENSG00000112309 B3GAT2 beta-1,3-glucuronyltransferase 2 -1.8490 0.0000
63169 ENSG00000259410 novel transcript -1.8483 0.0000
63168 ENSG00000229931 ATXN1-AS1 ATXN1 antisense RNA 1 -1.8482 0.0000
63167 ENSG00000278631 SOWAHCP5 SOWAHC pseudogene 5 -1.8481 0.0000
63166 ENSG00000213820 RPL13P2 ribosomal protein L13 pseudogene 2 -1.8474 0.0000
63165 ENSG00000231702 ribosomal protein L39 (RPL39) pseudogene -1.8466 0.0000
63164 ENSG00000230500 MKX-AS1 MKX antisense RNA 1 -1.8465 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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