Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773598

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773598


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M225Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230926 pseudogene similar to part of SAH (SA hypertension-associated homolog (rat)) 2.5850 0.0007
2 ENSG00000205330 OR6C1 olfactory receptor family 6 subfamily C member 1 2.3219 0.0000
3 ENSG00000266712 MIR3149 microRNA 3149 2.3219 0.0000
4 ENSG00000278894 TEC 2.3219 0.0000
5 ENSG00000199270 RNA5S12 RNA, 5S ribosomal 12 2.2730 0.0000
6 ENSG00000228120 novel transcript 2.1761 0.0000
7 ENSG00000199334 RNA5S11 RNA, 5S ribosomal 11 2.1720 0.0000
8 ENSG00000203825 phosphodiesterase 4D interacting protein (myomegalin) (PDE4DIP) pseudogene 2.1610 0.0000
10 ENSG00000243508 DNAJB6P7 DNAJB6 pseudogene 7 2.0850 0.0000
63164 ENSG00000231069 novel pseudogene -1.5339 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000125817 CENPB centromere protein B -1.5368 0.0000
63172 ENSG00000177133 PRDM16-DT PRDM16 divergent transcript -1.5366 0.0000
63171 ENSG00000168936 TMEM129 transmembrane protein 129, E3 ubiquitin ligase -1.5357 0.0000
63170 ENSG00000259138 novel transcript, antisense to NEK9 and TMED10 -1.5354 0.0000
63169 ENSG00000125845 BMP2 bone morphogenetic protein 2 -1.5354 0.0000
63168 ENSG00000233131 RPS15AP14 ribosomal protein S15a pseudogene 14 -1.5343 0.0001
63167 ENSG00000154518 ATP5MC3 ATP synthase membrane subunit c locus 3 -1.5343 0.0001
63166 ENSG00000106484 MEST mesoderm specific transcript -1.5342 0.0000
63165 ENSG00000240857 RDH14 retinol dehydrogenase 14 -1.5341 0.0000
63164 ENSG00000231069 novel pseudogene -1.5339 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...