Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773599

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773599


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M226Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000232809 VDAC1P10 voltage dependent anion channel 1 pseudogene 10 2.5850 0.0000
2 ENSG00000256315 novel transcript 2.5850 0.0000
3 ENSG00000276963 ankyrin repeat domain 30B (ANKRD30B) pseudogene 2.5850 0.0000
4 ENSG00000214429 CYCSP6 CYCS pseudogene 6 2.3920 0.0000
5 ENSG00000264997 Small nucleolar RNA SNORD55/SNORD39 2.3774 0.0000
6 ENSG00000222154 RN7SKP218 RN7SK pseudogene 218 2.3219 0.0003
7 ENSG00000231022 RPS3AP9 RPS3A pseudogene 9 2.3219 0.0003
8 ENSG00000248185 dedicator of cytokinesis family pseudogene 2.3219 0.0000
9 ENSG00000249102 novel transcript 2.3219 0.0000
10 ENSG00000250437 LINC02161 long intergenic non-protein coding RNA 2161 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000277529 NF1P10 neurofibromin 1 pseudogene 10 -2.0318 0.5670
63172 ENSG00000243749 TMEM35B transmembrane protein 35B -2.0316 0.0000
63171 ENSG00000143412 ANXA9 annexin A9 -2.0315 0.0000
63170 ENSG00000220771 BOLA2P3 bolA family member 2 pseudogene 3 -2.0314 0.0000
63169 ENSG00000261790 novel transcript -2.0306 0.0000
63167 ENSG00000214417 KRT18P13 keratin 18 pseudogene 13 -2.0300 0.0000
63166 ENSG00000273012 novel transcript -2.0297 0.0000
63165 ENSG00000235608 NKX1-1 NK1 homeobox 1 -2.0296 0.0000
63164 ENSG00000272543 MIR4787 microRNA 4787 -2.0291 0.0000
10 ENSG00000250437 LINC02161 long intergenic non-protein coding RNA 2161 2.3219 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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