Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773600

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773600


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M227Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259941 novel transcript 2.3219 0.0003
2 ENSG00000235833 coiled-coil domain containing 144C (CCDC144C) pseudogene 2.0763 0.0000
3 ENSG00000196403 OR10D1P olfactory receptor family 10 subfamily D member 1 pseudogene 2.0000 0.0023
4 ENSG00000242072 novel transcript 2.0000 0.0023
5 ENSG00000198406 BZW1P2 basic leucine zipper and W2 domains 1 pseudogene 2 1.7925 0.0000
6 ENSG00000183631 PRR32 proline rich 32 1.5850 0.0177
7 ENSG00000225912 RPL26P36 ribosomal protein L26 pseudogene 36 1.5850 0.0177
8 ENSG00000227785 leukemia NUP98 fusion partner 1 (LNP1) pseudogene 1.5850 0.0177
10 ENSG00000235511 OFD1P18Y OFD1 pseudogene 18 Y-linked 1.5850 0.0177
63164 ENSG00000132481 TRIM47 tripartite motif containing 47 -1.9005 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000268603 novel transcript, antisense to SPEG -1.9030 0.0000
63172 ENSG00000249249 novel transcript -1.9027 0.0000
63171 ENSG00000274663 RNA5SP526 RNA, 5S ribosomal pseudogene 526 -1.9018 0.0000
63170 ENSG00000284585 MIR4722 microRNA 4722 -1.9016 0.0000
63169 ENSG00000250579 uncharacterized LOC101929176 -1.9015 0.0000
63168 ENSG00000118496 FBXO30 F-box protein 30 -1.9014 0.0000
63167 ENSG00000167617 CDC42EP5 CDC42 effector protein 5 -1.9010 0.0000
63166 ENSG00000108107 RPL28 ribosomal protein L28 -1.9009 0.0000
63165 ENSG00000170275 CRTAP cartilage associated protein -1.9006 0.0000
63164 ENSG00000132481 TRIM47 tripartite motif containing 47 -1.9005 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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