Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773601

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773601


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M228Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000176774 MAGEB18 MAGE family member B18 2.0000 0.0000
2 ENSG00000228777 LINC02534 long intergenic non-protein coding RNA 2534 1.5850 0.0234
3 ENSG00000251510 novel transcript 1.5850 0.0234
4 ENSG00000252209 RNU1-48P RNA, U1 small nuclear 48, pseudogene 1.5850 0.0234
5 ENSG00000279401 TEC 1.5850 0.0234
6 ENSG00000212027 MIR374B microRNA 374b 1.4838 0.0000
7 ENSG00000216938 RPL7P58 ribosomal protein L7 pseudogene 58 1.3900 0.0001
8 ENSG00000265102 MIR3942 microRNA 3942 1.3900 0.0001
9 ENSG00000283534 MIR374C microRNA 374c 1.3691 0.0000
10 ENSG00000199535 RNA5SP305 RNA, 5S ribosomal pseudogene 305 1.2925 0.0036

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000212572 RNU6-903P RNA, U6 small nuclear 903, pseudogene -1.7744 0.0000
63172 ENSG00000176749 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 -1.7743 0.0000
63171 ENSG00000179943 FIZ1 FLT3 interacting zinc finger 1 -1.7742 0.0000
63170 ENSG00000283020 DUX4L37 double homeobox 4 like 37 (pseudogene) -1.7742 0.0000
63169 ENSG00000096968 JAK2 Janus kinase 2 -1.7739 0.0000
63168 ENSG00000137142 IGFBPL1 insulin like growth factor binding protein like 1 -1.7736 0.0000
63167 ENSG00000259353 novel transcript, antisense to FAM63B -1.7735 0.0000
63166 ENSG00000277671 NA -1.7730 0.0000
63165 ENSG00000225836 novel transcript -1.7721 0.0000
63164 ENSG00000247970 novel transcript -1.7716 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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