Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773602

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773602


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M229Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000264104 SECIS binding protein 2 (SECISBP2) pseudogene 2.8074 0.0000
2 ENSG00000231675 nuclear receptor coactivator 6 (NCOA6) pseudogene 2.7518 0.0000
3 ENSG00000256238 SUPT16HP1 SPT16 homolog, facilitates chromatin remodeling subunit pseudogene 1 2.5850 0.0001
4 ENSG00000201104 RNU6-11P RNA, U6 small nuclear 11, pseudogene 2.4096 0.0000
5 ENSG00000169550 MUC15 mucin 15, cell surface associated 2.3219 0.0000
6 ENSG00000186886 OR5D3P olfactory receptor family 5 subfamily D member 3 pseudogene 2.3219 0.0008
7 ENSG00000212293 NA 2.3219 0.0008
8 ENSG00000224517 HTR2A-AS1 HTR2A antisense RNA 1 2.3219 0.0008
9 ENSG00000233907 LINC01761 long intergenic non-protein coding RNA 1761 2.3219 0.0008
10 ENSG00000234878 HSPE1P1 heat shock protein family E (Hsp10) member 1 pseudogene 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000163734 CXCL3 C-X-C motif chemokine ligand 3 -1.5867 0.0000
63172 ENSG00000155903 RASA2 RAS p21 protein activator 2 -1.5866 0.0000
63171 ENSG00000141622 RNF165 ring finger protein 165 -1.5866 0.0000
63170 ENSG00000246375 PPM1K-DT PPM1K divergent transcript -1.5865 0.0000
63169 ENSG00000132446 FTHL17 ferritin heavy chain like 17 -1.5861 0.0001
63168 ENSG00000198046 ZNF667 zinc finger protein 667 -1.5861 0.0000
63167 ENSG00000090376 IRAK3 interleukin 1 receptor associated kinase 3 -1.5857 0.0000
63166 ENSG00000238230 LINC00391 long intergenic non-protein coding RNA 391 -1.5856 0.0000
63165 ENSG00000110200 ANAPC15 anaphase promoting complex subunit 15 -1.5854 0.0000
63164 ENSG00000182183 SHISAL2A shisa like 2A -1.5851 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...