Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773603

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773603


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M230Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000269136 BRI3BPP1 BRI3 binding protein pseudogene 1 2.8074 0.0000
3 ENSG00000284500 novel transcript 2.6962 0.0000
4 ENSG00000206770 Y RNA 2.5850 0.0001
5 ENSG00000248692 ADGRL3-AS1 ADGRL3 antisense RNA 1 2.5850 0.0001
6 ENSG00000253317 novel transcript 2.5850 0.0001
7 ENSG00000276467 zinc finger protein 831 (ZNF831) pseudogene 2.5850 0.0001
8 ENSG00000279059 TEC 2.5646 0.0000
9 ENSG00000112685 EXOC2 exocyst complex component 2 2.4459 0.0000
10 ENSG00000133115 STOML3 stomatin like 3 2.3219 0.0007
63164 ENSG00000266466 novel transcript, antisense to C17orf51 -1.8385 0.0011

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000277873 novel transcript, antisense to RFC5 -1.8457 0.0000
63172 ENSG00000157005 SST somatostatin -1.8455 0.0000
63171 ENSG00000250681 novel transcript -1.8436 0.0000
63170 ENSG00000226887 ERVMER34-1 endogenous retrovirus group MER34 member 1, envelope -1.8421 0.0000
63169 ENSG00000231547 ribosomal protein S20 (RPS20) pseudogene -1.8415 0.0384
63168 ENSG00000180992 MRPL14 mitochondrial ribosomal protein L14 -1.8412 0.0027
63167 ENSG00000274817 NA -1.8409 0.0000
63166 ENSG00000233693 PBX1-AS1 PBX1 antisense RNA 1 -1.8399 0.0044
63165 ENSG00000273082 novel transcript, antisense to LARGE1 -1.8395 0.0000
63164 ENSG00000266466 novel transcript, antisense to C17orf51 -1.8385 0.0011

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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