Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773604

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773604


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M231Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000241965 RPS2P25 ribosomal protein S2 pseudogene 25 4.4624 0.0000
2 ENSG00000265712 intraflagellar transport 57 homolog (Chlamydomonas) (IFT57) pseudogene 2.8774 0.0000
3 ENSG00000198829 SUCNR1 succinate receptor 1 2.8074 0.0000
4 ENSG00000223915 DPPA2P1 developmental pluripotency associated 2 pseudogene 1 2.8074 0.0000
5 ENSG00000248766 novel pseudogene 2.8074 0.0000
6 ENSG00000162630 B3GALT2 beta-1,3-galactosyltransferase 2 2.5850 0.0000
7 ENSG00000260244 novel transcript, overlapping GUCY1A3 2.5850 0.0001
8 ENSG00000249239 Guanine nucleotide-binding protein subunit beta-2-like 1 (GNB2L1) pseudogene 2.4387 0.0000
9 ENSG00000248848 PPBPP2 pro-platelet basic protein pseudogene 2 2.4320 0.0000
10 ENSG00000251787 RNU7-47P RNA, U7 small nuclear 47 pseudogene 2.3258 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000172818 OVOL1 ovo like transcriptional repressor 1 -2.3892 0.0000
63172 ENSG00000166897 ELFN2 extracellular leucine rich repeat and fibronectin type III domain containing 2 -2.3890 0.0000
63171 ENSG00000233492 novel transcript -2.3890 0.0000
63170 ENSG00000079689 SCGN secretagogin, EF-hand calcium binding protein -2.3890 0.0000
63169 ENSG00000253695 novel transcript -2.3888 0.0000
63168 ENSG00000253186 coiled-coil domain containing 144 (CCDC144) pseudogene -2.3888 0.0000
63167 ENSG00000168792 ABHD15 abhydrolase domain containing 15 -2.3885 0.0000
63166 ENSG00000206660 Y RNA -2.3880 0.0000
63165 ENSG00000090238 YPEL3 yippee like 3 -2.3880 0.0000
63164 ENSG00000274286 ADRA2B adrenoceptor alpha 2B -2.3877 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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