Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773606

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773606


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M233Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000225602 MTOR-AS1 MTOR antisense RNA 1 3.7004 0.0000
2 ENSG00000228590 MIR4432 host gene 3.7004 0.0000
3 ENSG00000239180 Y RNA 3.5850 0.0000
4 ENSG00000274421 novel transcript 3.5850 0.0000
5 ENSG00000281883 novel transcript 3.5850 0.0000
6 ENSG00000202398 RNU6-61P RNA, U6 small nuclear 61, pseudogene 3.5713 0.0000
7 ENSG00000204136 GGTA1 glycoprotein alpha-galactosyltransferase 1 (inactive) 3.4594 0.0000
8 ENSG00000206979 SNORD61 small nucleolar RNA, C/D box 61 3.4594 0.0000
9 ENSG00000260059 novel transcript 3.4594 0.0000
10 ENSG00000261402 novel transcript 3.4154 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000152455 SUV39H2 suppressor of variegation 3-9 homolog 2 -2.8463 0.0000
63172 ENSG00000185269 NOTUM notum, palmitoleoyl-protein carboxylesterase -2.8456 0.0000
63171 ENSG00000124104 SNX21 sorting nexin family member 21 -2.8449 0.0000
63170 ENSG00000243048 FTHL18 ferritin heavy chain like 18 -2.8441 0.0015
63169 ENSG00000099840 IZUMO4 IZUMO family member 4 -2.8436 0.0000
63168 ENSG00000135439 AGAP2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 -2.8434 0.0000
63167 ENSG00000113722 CDX1 caudal type homeobox 1 -2.8434 0.0000
63166 ENSG00000186897 C1QL4 complement C1q like 4 -2.8425 0.0000
63165 ENSG00000171246 NPTX1 neuronal pentraxin 1 -2.8420 0.0000
63164 ENSG00000171396 KRTAP4-4 keratin associated protein 4-4 -2.8419 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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