Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773607

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773607


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M234Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000101336 HCK HCK proto-oncogene, Src family tyrosine kinase 4.5236 0.0000
2 ENSG00000212571 RNA5SP482 RNA, 5S ribosomal pseudogene 482 4.5236 0.0000
3 ENSG00000207176 Y RNA 4.0875 0.0000
4 ENSG00000225175 histidine-rich glycoprotein (HRG) pseudogene 4.0000 0.0000
5 ENSG00000260723 novel transcript, sense intronic to a novel protein 3.9198 0.0000
6 ENSG00000261394 novel transcript, antisense to a novel protein 3.9198 0.0000
7 ENSG00000278979 TEC 3.9198 0.0000
8 ENSG00000157538 VPS26C VPS26 endosomal protein sorting factor C 3.9069 0.0000
9 ENSG00000034713 GABARAPL2 GABA type A receptor associated protein like 2 3.7900 0.0000
10 ENSG00000276523 novel transcript, antisense to GABARAPL2 3.7900 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000176007 FAM220BP family with sequence similarity 220 member B, pseudogene -2.7759 0.0000
63172 ENSG00000224061 SRSF3P4 SRSF3 pseudogene 4 -2.7758 0.0000
63171 ENSG00000130177 CDC16 cell division cycle 16 -2.7753 0.0000
63170 ENSG00000203667 COX20 cytochrome c oxidase assembly factor COX20 -2.7741 0.0000
63169 ENSG00000280217 novel transcript -2.7740 0.0001
63168 ENSG00000118680 MYL12B myosin light chain 12B -2.7739 0.0000
63167 ENSG00000212443 SNORA53 small nucleolar RNA, H/ACA box 53 -2.7733 0.0000
63166 ENSG00000175701 MTLN mitoregulin -2.7718 0.0000
63165 ENSG00000243305 novel transcript -2.7716 0.0007
63164 ENSG00000010818 HIVEP2 HIVEP zinc finger 2 -2.7713 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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