Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773608

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773608


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M235Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202386 RNA5SP211 RNA, 5S ribosomal pseudogene 211 2.5850 0.0000
2 ENSG00000280149 TEC 2.3324 0.0000
3 ENSG00000102158 MAGT1 magnesium transporter 1 2.3219 0.0003
4 ENSG00000177432 NAP1L5 nucleosome assembly protein 1 like 5 2.3219 0.0000
5 ENSG00000218020 THAP12P5 THAP domain containing 12 pseudogene 5 2.3219 0.0000
6 ENSG00000220749 RPL21P28 ribosomal protein L21 pseudogene 28 2.3219 0.0000
7 ENSG00000224072 VEZTP1 VEZT pseudogene 1 2.3219 0.0003
8 ENSG00000228618 novel transcript 2.3219 0.0003
9 ENSG00000232795 SCAND3P1 SCAN domain containing 3 pseudogene 1 2.3219 0.0003
10 ENSG00000236876 TMSB4XP1 TMSB4X pseudogene 1 2.3219 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000164751 PEX2 peroxisomal biogenesis factor 2 -1.8891 0.0000
63172 ENSG00000272455 MRPL20-DT MRPL20 divergent transcript -1.8881 0.0000
63171 ENSG00000188566 NDOR1 NADPH dependent diflavin oxidoreductase 1 -1.8880 0.0000
63170 ENSG00000267162 SDHDP1 succinate dehydrogenase complex subunit D pseudogene 1 -1.8874 0.0000
63169 ENSG00000178821 TMEM52 transmembrane protein 52 -1.8872 0.0000
63168 ENSG00000178026 LRRC75B leucine rich repeat containing 75B -1.8871 0.0000
63167 ENSG00000184307 ZDHHC23 zinc finger DHHC-type palmitoyltransferase 23 -1.8871 0.0000
63166 ENSG00000125872 LRRN4 leucine rich repeat neuronal 4 -1.8867 0.0000
63165 ENSG00000279528 TEC -1.8865 0.0000
63164 ENSG00000228343 novel transcript -1.8865 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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