Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773610

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773610


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M237Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000187175 KRTAP12-1 keratin associated protein 12-1 3.1962 0.0000
2 ENSG00000229968 C2H2 type zinc finger pseudogene 3.1699 0.0000
3 ENSG00000244332 novel transcript 3.1699 0.0000
4 ENSG00000214035 karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2) pseudogene 3.0000 0.0000
5 ENSG00000236343 EI24P4 EI24 pseudogene 4 3.0000 0.0000
6 ENSG00000250197 HMGN1P15 high mobility group nucleosome binding domain 1 pseudogene 15 3.0000 0.0000
7 ENSG00000251804 RNU6-1294P RNA, U6 small nuclear 1294, pseudogene 3.0000 0.0000
8 ENSG00000238079 novel pseudogene 2.8873 0.0000
9 ENSG00000127780 OR1E2 olfactory receptor family 1 subfamily E member 2 2.8074 0.0000
10 ENSG00000187325 TAF9B TATA-box binding protein associated factor 9b 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000214428 NPM1P10 nucleophosmin 1 pseudogene 10 -2.3219 1.0000
63172 ENSG00000213169 ribosomal protein L8 (RPL8) pseudogene -2.3219 0.0404
63171 ENSG00000208024 MIR199A2 microRNA 199a-2 -2.3219 0.6161
63170 ENSG00000206718 RNU6-546P RNA, U6 small nuclear 546, pseudogene -2.3219 1.0000
63169 ENSG00000205412 HNRNPA1P20 heterogeneous nuclear ribonucleoprotein A1 pseudogene 20 -2.3219 0.6161
63168 ENSG00000201356 RNA5SP500 RNA, 5S ribosomal pseudogene 500 -2.3219 1.0000
63167 ENSG00000201016 RNU6-374P RNA, U6 small nuclear 374, pseudogene -2.3219 0.6161
63166 ENSG00000200231 RNU1-23P RNA, U1 small nuclear 23, pseudogene -2.3219 1.0000
63165 ENSG00000200101 RNU6-508P RNA, U6 small nuclear 508, pseudogene -2.3219 1.0000
63164 ENSG00000199202 RNA5SP289 RNA, 5S ribosomal pseudogene 289 -2.3219 0.6161

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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