Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773611

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773611


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M238Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000261037 novel transcript 3.0000 0.0000
2 ENSG00000255033 SERPINA15P serpin family A member 15, pseudogene 2.8074 0.0000
3 ENSG00000227888 FAM66A family with sequence similarity 66 member A 2.5850 0.0000
4 ENSG00000254044 novel transcript, sense overlapping to STPG2 2.5850 0.0001
5 ENSG00000256211 SKP1P2 S-phase kinase associated protein 1 pseudogene 2 2.5850 0.0001
6 ENSG00000278085 CT45A8 cancer/testis antigen family 45 member A8 2.5850 0.0001
7 ENSG00000199450 RNA5SP276 RNA, 5S ribosomal pseudogene 276 2.3219 0.0004
8 ENSG00000219487 small nuclear ribonucleoprotein polypeptide B'' (SNRPB2) pseudogene 2.3219 0.0000
9 ENSG00000223905 peroxiredoxin 5 (PRDX5) pseudogene 2.3219 0.0004
10 ENSG00000227676 LINC01068 long intergenic non-protein coding RNA 1068 2.3219 0.0004

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000255120 OVOL1-AS1 OVOL1 antisense RNA 1 -1.8310 0.0000
63172 ENSG00000144031 ANKRD53 ankyrin repeat domain 53 -1.8307 0.0000
63171 ENSG00000252963 RN7SKP147 RN7SK pseudogene 147 -1.8306 0.1514
63170 ENSG00000251851 RNU6-772P RNA, U6 small nuclear 772, pseudogene -1.8306 0.1514
63169 ENSG00000204010 IFIT1B interferon induced protein with tetratricopeptide repeats 1B -1.8306 0.6101
63168 ENSG00000164291 ARSK arylsulfatase family member K -1.8305 0.0006
63167 ENSG00000238108 glycine cleavage system protein H (aminomethyl carrier) (GCSH) pseudogene -1.8305 0.0625
63166 ENSG00000258520 novel transcript -1.8303 0.0000
63165 ENSG00000174840 PDE12 phosphodiesterase 12 -1.8302 0.0000
63164 ENSG00000169957 ZNF768 zinc finger protein 768 -1.8298 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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