Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773612

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773612


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M239Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000186086 NBPF6 NBPF member 6 2.8074 0.0000
2 ENSG00000156575 PRG3 proteoglycan 3, pro eosinophil major basic protein 2 2.6591 0.0000
3 ENSG00000275293 Metazoan signal recognition particle RNA 2.5850 0.0000
4 ENSG00000252517 NA 2.4973 0.0000
5 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 2.3219 0.0008
6 ENSG00000197683 KRTAP26-1 keratin associated protein 26-1 2.3219 0.0008
7 ENSG00000202473 RN7SKP81 RN7SK pseudogene 81 2.3219 0.0008
8 ENSG00000212457 RNU6-644P RNA, U6 small nuclear 644, pseudogene 2.3219 0.0000
9 ENSG00000214025 ATP5PBP4 ATP synthase peripheral stalk-membrane subunit b pseudogene 4 2.3219 0.0000
10 ENSG00000225775 novel transcript 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000227403 LINC01806 long intergenic non-protein coding RNA 1806 -1.7966 0.0000
63172 ENSG00000135245 HILPDA hypoxia inducible lipid droplet associated -1.7961 0.0000
63171 ENSG00000273747 novel transcript, antisense to BTBD1 -1.7958 0.0000
63170 ENSG00000179840 PIK3CD-AS1 PIK3CD antisense RNA 1 -1.7952 0.0000
63169 ENSG00000205981 DNAJC19 DnaJ heat shock protein family (Hsp40) member C19 -1.7945 0.0040
63168 ENSG00000140939 NOL3 nucleolar protein 3 -1.7945 0.0000
63167 ENSG00000181085 MAPK15 mitogen-activated protein kinase 15 -1.7944 0.0000
63166 ENSG00000141431 ASXL3 ASXL transcriptional regulator 3 -1.7943 0.0000
63165 ENSG00000235173 HGH1 HGH1 homolog -1.7934 0.0000
63164 ENSG00000250230 novel transcript -1.7929 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...