Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773614

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773614


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M241Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000257779 chromosome 6 open reading frame 35 (C6orf35) pseudogene 3.0000 0.0000
2 ENSG00000243297 RPL31P61 ribosomal protein L31 pseudogene 61 2.5850 0.0000
3 ENSG00000243548 RN7SL101P RNA, 7SL, cytoplasmic 101, pseudogene 2.5850 0.0000
4 ENSG00000222693 RN7SKP120 RN7SK pseudogene 120 2.4577 0.0000
5 ENSG00000222054 RNA5SP177 RNA, 5S ribosomal pseudogene 177 2.3219 0.0000
6 ENSG00000225923 secretory carrier membrane protein 1 (SCAMP1) pseudogene 2.3219 0.0000
7 ENSG00000233057 EEF1A1P14 eukaryotic translation elongation factor 1 alpha 1 pseudogene 14 2.3219 0.0000
8 ENSG00000235303 novel transcript 2.3219 0.0003
9 ENSG00000235334 BTG3P1 BTG anti-proliferation factor 3 pseudogene 1 2.3219 0.0003
10 ENSG00000236683 HMGA1P1 high mobility group AT-hook 1 pseudogene 1 2.3219 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000155367 PPM1J protein phosphatase, Mg2+/Mn2+ dependent 1J -2.1288 0.0000
63172 ENSG00000276089 NA -2.1287 0.0000
63171 ENSG00000280083 TEC -2.1286 0.0001
63170 ENSG00000248514 novel transcript -2.1285 0.0000
63169 ENSG00000138134 STAMBPL1 STAM binding protein like 1 -2.1279 0.0000
63168 ENSG00000143554 SLC27A3 solute carrier family 27 member 3 -2.1277 0.0000
63167 ENSG00000196449 YRDC yrdC N6-threonylcarbamoyltransferase domain containing -2.1275 0.0000
63166 ENSG00000231447 novel transcript -2.1273 0.0020
63165 ENSG00000283313 U6 spliceosomal RNA -2.1268 0.0000
63164 ENSG00000255091 novel transcript -2.1267 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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