Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773615

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773615


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M242Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248148 novel transcript 2.3219 0.0000
2 ENSG00000264090 MIR4666B microRNA 4666b 2.3219 0.0000
3 ENSG00000282993 TEC 2.3219 0.0003
4 ENSG00000221650 MIR1267 microRNA 1267 2.0000 0.0021
5 ENSG00000223770 CACNA2D1-AS1 CACNA2D1 antisense RNA 1 2.0000 0.0000
6 ENSG00000251593 MSNP1 moesin pseudogene 1 2.0000 0.0021
7 ENSG00000257855 p53 and DNA-damage regulated 1 (PDRG1) pseudogene 1.7331 0.0000
8 ENSG00000181009 OR52N5 olfactory receptor family 52 subfamily N member 5 1.5850 0.0003
9 ENSG00000207269 RN7SKP62 RN7SK pseudogene 62 1.5850 0.0166
10 ENSG00000218351 RPS3AP23 RPS3A pseudogene 23 1.5850 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000267091 CTBP2P7 CTBP2 pseudogene 7 -1.9099 0.0000
63172 ENSG00000153165 RGPD3 RANBP2 like and GRIP domain containing 3 -1.9098 0.0000
63171 ENSG00000141431 ASXL3 ASXL transcriptional regulator 3 -1.9092 0.0000
63170 ENSG00000131931 THAP1 THAP domain containing 1 -1.9091 0.0000
63169 ENSG00000007376 RPUSD1 RNA pseudouridine synthase domain containing 1 -1.9088 0.0000
63168 ENSG00000185668 POU3F1 POU class 3 homeobox 1 -1.9086 0.0000
63167 ENSG00000143418 CERS2 ceramide synthase 2 -1.9083 0.0000
63166 ENSG00000166920 C15orf48 chromosome 15 open reading frame 48 -1.9082 0.0000
63164 ENSG00000215417 MIR17HG miR-17-92a-1 cluster host gene -1.9077 0.0000
10 ENSG00000218351 RPS3AP23 RPS3A pseudogene 23 1.5850 0.0003

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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