Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773616

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773616


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M243Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
2 ENSG00000243025 MTAPP1 methylthioadenosine phosphorylase pseudogene 1 2.0000 0.0024
3 ENSG00000252864 RNA5SP278 RNA, 5S ribosomal pseudogene 278 2.0000 0.0000
4 ENSG00000212259 RNU6-308P RNA, U6 small nuclear 308, pseudogene 1.8617 0.0000
5 ENSG00000259032 ENSAP2 endosulfine alpha pseudogene 2 1.8000 0.0000
6 ENSG00000226414 MTCYBP38 MT-CYB pseudogene 38 1.7890 0.0000
7 ENSG00000279698 TEC 1.6667 0.0000
8 ENSG00000265425 novel transcript 1.6610 0.0000
9 ENSG00000231822 SMC3P1 SMC3 pseudogene 1 1.6462 0.0000
10 ENSG00000243122 ribosomal protein S15 (RPS15) pseudogene 1.5975 0.0000
63164 ENSG00000201442 Y RNA -1.8599 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000174145 NWD2 NACHT and WD repeat domain containing 2 -1.8619 0.0000
63172 ENSG00000271857 novel transcript, antisense to RUNX2 -1.8617 0.0000
63171 ENSG00000250141 LINC02276 long intergenic non-protein coding RNA 2276 -1.8617 0.6082
63170 ENSG00000249513 novel transcript -1.8617 0.6082
63169 ENSG00000228064 novel transcript -1.8617 0.6179
63168 ENSG00000245293 CYP2U1-AS1 CYP2U1 and SGMS2 antisense RNA 1 -1.8605 0.0000
63167 ENSG00000155966 AFF2 AF4/FMR2 family member 2 -1.8605 0.0000
63166 ENSG00000236459 HNRNPA1P22 heterogeneous nuclear ribonucleoprotein A1 pseudogene 22 -1.8602 0.0223
63165 ENSG00000204962 PCDHA8 protocadherin alpha 8 -1.8601 0.0000
63164 ENSG00000201442 Y RNA -1.8599 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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