Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773617

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773617


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M244Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000207225 RNU6-692P RNA, U6 small nuclear 692, pseudogene 2.3219 0.0003
2 ENSG00000221214 MIR548E microRNA 548e 2.3219 0.0003
3 ENSG00000263561 MIR4704 microRNA 4704 2.3219 0.0003
4 ENSG00000279595 TEC 2.2925 0.0000
5 ENSG00000233316 DSCR10 Down syndrome critical region 10 2.0458 0.0000
6 ENSG00000237484 LINC01684 long intergenic non-protein coding RNA 1684 2.0000 0.0025
7 ENSG00000258496 novel transcript 2.0000 0.0000
8 ENSG00000269833 novel zinc finger protein pseudogene 2.0000 0.0025
9 ENSG00000231300 EZH2P1 enhancer of zeste 2 polycomb repressive complex 2 subunit pseudogene 1 1.8813 0.0000
10 ENSG00000270835 CTAGE family, member 5 (CTAGE5) pseudogene 1.8617 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000207609 MIR491 microRNA 491 -1.8962 0.3804
63172 ENSG00000198889 DCAF12L1 DDB1 and CUL4 associated factor 12 like 1 -1.8957 0.0000
63171 ENSG00000197067 OR2T32P olfactory receptor family 2 subfamily T member 32 pseudogene -1.8956 0.0001
63170 ENSG00000257488 LINC02354 long intergenic non-protein coding RNA 2354 -1.8955 0.0000
63169 ENSG00000224466 CDCA4P2 cell division cycle associated 4 pseudogene 2 -1.8955 0.0000
63168 ENSG00000198794 SCAMP5 secretory carrier membrane protein 5 -1.8940 0.0000
63167 ENSG00000226435 ANKRD18DP ankyrin repeat domain 18D, pseudogene -1.8940 0.0000
63166 ENSG00000251088 novel transcript -1.8940 0.6982
63165 ENSG00000212443 SNORA53 small nucleolar RNA, H/ACA box 53 -1.8940 0.0000
63164 ENSG00000280114 phosphodiesterase 4D interacting protein (myomegalin) (PDE4DIP) pseudogene -1.8940 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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