Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773618

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773618


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M245Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000271356 USP21P2 USP21 pseudogene 2 3.3219 0.0000
2 ENSG00000243871 RN7SL487P RNA, 7SL, cytoplasmic 487, pseudogene 3.1699 0.0000
3 ENSG00000259433 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) (PRKRIR) pseudogene 3.0000 0.0000
4 ENSG00000235748 SEPTIN14P12 septin 14 pseudogene 12 2.8074 0.0000
5 ENSG00000238680 RNU6-1037P RNA, U6 small nuclear 1037, pseudogene 2.8074 0.0000
6 ENSG00000253584 novel transcript 2.8074 0.0000
7 ENSG00000258930 tetratricopeptide repeat domain 7B (TTC7B) pseudogene 2.8074 0.0000
8 ENSG00000057468 MSH4 mutS homolog 4 2.7332 0.0000
9 ENSG00000254465 THAP12P4 THAP domain containing 12 pseudogene 4 2.6458 0.0000
10 ENSG00000200369 RNU6-666P RNA, U6 small nuclear 666, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000209042 SNORD12C small nucleolar RNA, C/D box 12C -2.3599 0.0000
63172 ENSG00000225214 novel transcript (LOC100127920) -2.3599 0.0074
63171 ENSG00000237605 DYRK3-AS1 DYRK3 antisense RNA 1 -2.3596 0.0000
63170 ENSG00000143479 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 -2.3596 0.0000
63169 ENSG00000270076 novel transcript -2.3592 0.0000
63168 ENSG00000250238 pseudogene similar to part of WEE1 homolog (WEE1) -2.3588 0.0000
63167 ENSG00000260400 novel transcript, overlapping to TET1 -2.3585 0.0275
63166 ENSG00000237294 EIF4BP9 eukaryotic translation initiation factor 4B pseudogene 9 -2.3585 0.0121
63165 ENSG00000251706 RNU7-61P RNA, U7 small nuclear 61 pseudogene -2.3570 0.0000
63164 ENSG00000284116 novel transcript -2.3561 0.0004

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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