Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773619

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773619


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M246Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259149 novel transcript 3.4594 0.0000
2 ENSG00000271642 MARK3P1 microtubule affinity regulating kinase 3 pseudogene 1 3.4594 0.0000
3 ENSG00000168126 OR2W6P olfactory receptor family 2 subfamily W member 6 pseudogene 3.3219 0.0000
4 ENSG00000270510 coiled-coil domain containing 90B (CCDC90B) pseudogene 3.3219 0.0000
5 ENSG00000233273 AMMECR1LP1 AMMECR1 like pseudogene 1 3.1699 0.0000
6 ENSG00000233847 ERCC8-AS1 ERCC8 antisense RNA 1 3.1699 0.0000
7 ENSG00000234118 RPL13AP6 ribosomal protein L13a pseudogene 6 3.1699 0.0000
8 ENSG00000241136 PAICSP6 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 6 3.1640 0.0000
9 ENSG00000234223 novel transcript 3.1133 0.0000
10 ENSG00000225276 MTND1P18 MT-ND1 pseudogene 18 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000257426 coronin, actin binding protein, 1C (CORO1C) pseudogene -2.4534 0.6172
63172 ENSG00000237806 FAUP2 FAU pseudogene 2 -2.4534 0.1049
63171 ENSG00000231600 zinc finger and BTB domain containing 20 (ZBTB20) pseudogene -2.4534 0.1566
63170 ENSG00000230759 novel transcript -2.4534 0.6172
63169 ENSG00000216624 GAPDHP72 glyceraldehyde-3-phosphate dehydrogenase pseudogene 72 -2.4534 0.6172
63168 ENSG00000134716 CYP2J2 cytochrome P450 family 2 subfamily J member 2 -2.4534 0.1566
63167 ENSG00000283258 novel transcript -2.4518 0.0000
63166 ENSG00000231702 ribosomal protein L39 (RPL39) pseudogene -2.4512 0.0000
63165 ENSG00000153132 CLGN calmegin -2.4511 0.0000
63164 ENSG00000134602 STK26 serine/threonine kinase 26 -2.4511 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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