Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773620

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773620


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M247Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000023318 ERP44 endoplasmic reticulum protein 44 3.0000 0.0000
2 ENSG00000119509 INVS inversin 3.0000 0.0000
3 ENSG00000239908 RN7SL75P RNA, 7SL, cytoplasmic 75, pseudogene 3.0000 0.0000
4 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 2.8295 0.0000
5 ENSG00000204296 TSBP1 testis expressed basic protein 1 2.8074 0.0000
6 ENSG00000228309 LINC01350 long intergenic non-protein coding RNA 1350 2.8074 0.0000
7 ENSG00000229142 HCG4P8 HLA complex group 4 pseudogene 8 2.8074 0.0000
9 ENSG00000237603 HMGB3P12 high mobility group box 3 pseudogene 12 2.8074 0.0000
10 ENSG00000241939 RN7SL517P RNA, 7SL, cytoplasmic 517, pseudogene 2.8074 0.0000
63164 ENSG00000106367 AP1S1 adaptor related protein complex 1 subunit sigma 1 -2.1258 0.0618

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000272913 novel transcript -2.1299 0.0000
63172 ENSG00000259705 novel transcript -2.1298 0.0000
63171 ENSG00000262151 novel transcript, antisense to CIITA -2.1296 0.0067
63170 ENSG00000198003 CCDC151 coiled-coil domain containing 151 -2.1289 0.0000
63169 ENSG00000258976 novel transcript -2.1269 0.0000
63168 ENSG00000243516 RPL12P40 ribosomal protein L12 pseudogene 40 -2.1263 0.0000
63167 ENSG00000253238 novel transcript -2.1262 0.0001
63166 ENSG00000241746 ribosomal protein L13a (RPL13A) pseudogene -2.1262 0.0001
63165 ENSG00000271985 acyl-CoA synthetase medium-chain family member 1 (ACSM1) pseudogene -2.1262 0.0010
63164 ENSG00000106367 AP1S1 adaptor related protein complex 1 subunit sigma 1 -2.1258 0.0618

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...