Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773621

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773621


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M248Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202609 MIR488 microRNA 488 3.4594 0.0000
2 ENSG00000206812 RNU6-38P RNA, U6 small nuclear 38, pseudogene 3.3219 0.0000
3 ENSG00000223684 IFNWP18 interferon omega 1 pseudogene 18 3.3219 0.0000
4 ENSG00000214194 SMIM30 small integral membrane protein 30 3.1699 0.0000
5 ENSG00000250791 novel transcript 3.1490 0.0000
6 ENSG00000259418 novel transcript, antisense to SORD 3.0340 0.0000
7 ENSG00000230643 chromosome 10 open reading frame 57 (C10orf57) pseudogene 3.0000 0.0000
8 ENSG00000238697 RNU6-261P RNA, U6 small nuclear 261, pseudogene 3.0000 0.0000
9 ENSG00000257504 LINC02297 long intergenic non-protein coding RNA 2297 3.0000 0.0000
10 ENSG00000257644 fatty acyl CoA reductase 2 (FAR2) pseudogene 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000255105 PTMAP15 prothymosin alpha pseudogene 15 -2.4797 0.0641
63172 ENSG00000240405 SAMMSON survival associated mitochondrial melanoma specific oncogenic non-coding RNA -2.4787 0.0004
63171 ENSG00000252179 RNA5SP255 RNA, 5S ribosomal pseudogene 255 -2.4784 0.0020
63170 ENSG00000243541 RN7SL104P RNA, 7SL, cytoplasmic 104, pseudogene -2.4782 0.0000
63169 ENSG00000252249 NA -2.4780 0.0016
63168 ENSG00000151458 ANKRD50 ankyrin repeat domain 50 -2.4779 0.0000
63167 ENSG00000226961 PPIAP60 peptidylprolyl isomerase A pseudogene 60 -2.4776 0.0000
63166 ENSG00000268592 RAET1E antisense RNA 1 -2.4761 0.0000
63165 ENSG00000235903 CPB2-AS1 CPB2 antisense RNA 1 -2.4759 0.0000
63164 ENSG00000122376 SHLD2 shieldin complex subunit 2 -2.4754 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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