Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773622

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773622


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M249Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000244921 MTCYBP18 MT-CYB pseudogene 18 3.3590 0.0000
2 ENSG00000249119 MTND6P4 MT-ND6 pseudogene 4 3.2621 0.0000
3 ENSG00000204361 NXPE2 neurexophilin and PC-esterase domain family member 2 2.5850 0.0002
4 ENSG00000231516 CBX1P5 chromobox 1 pseudogene 5 2.5850 0.0002
5 ENSG00000241926 MTCO1P55 MT-CO1 pseudogene 55 2.5850 0.0000
6 ENSG00000244169 RN7SL120P RNA, 7SL, cytoplasmic 120, pseudogene 2.5850 0.0002
7 ENSG00000254009 IGKV2D-38 immunoglobulin kappa variable 2D-38 (pseudogene) 2.5850 0.0002
8 ENSG00000182287 AP1S2 adaptor related protein complex 1 subunit sigma 2 2.4680 0.0000
9 ENSG00000247627 MTND4P12 MT-ND4 pseudogene 12 2.3293 0.0000
10 ENSG00000263963 NA 2.3293 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000236596 CRLF3P1 CRLF3 pseudogene 1 -1.7233 0.3614
63172 ENSG00000234451 G protein-coupled receptor, family C, group 5,member B (GPRC5B) pseudogene -1.7233 0.3614
63171 ENSG00000181965 NEUROG1 neurogenin 1 -1.7225 0.0000
63170 ENSG00000253884 chromosome 9 open reading frame 122 (C9orf122) pseudogene -1.7225 0.0008
63169 ENSG00000261437 novel transcript, antisense to ESRP1 -1.7224 0.0041
63168 ENSG00000263813 MIR3679 microRNA 3679 -1.7220 0.0000
63167 ENSG00000203805 PLPP4 phospholipid phosphatase 4 -1.7209 0.0000
63166 ENSG00000100395 L3MBTL2 L3MBTL histone methyl-lysine binding protein 2 -1.7203 0.0000
63165 ENSG00000100156 SLC16A8 solute carrier family 16 member 8 -1.7199 0.0000
63164 ENSG00000280057 TEC -1.7193 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...