Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773623

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773623


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M250Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000211815 TRAV36DV7 T cell receptor alpha variable 36/delta variable 7 3.1699 0.0000
2 ENSG00000235845 novel transcript 3.0000 0.0000
3 ENSG00000104327 CALB1 calbindin 1 2.5850 0.0000
4 ENSG00000232499 heterogeneous nuclear ribonucleoprotein A3 (hnRNPA3) pseudogene 2.5850 0.0000
5 ENSG00000232881 RPS10P21 ribosomal protein S10 pseudogene 21 2.5850 0.0000
6 ENSG00000241838 actin, beta (ACTB) pseudogene 2.5850 0.0000
7 ENSG00000250371 novel transcript 2.5850 0.0000
8 ENSG00000236799 LINC02626 long intergenic non-protein coding RNA 2626 2.4973 0.0000
9 ENSG00000086289 EPDR1 ependymin related 1 2.3219 0.0003
10 ENSG00000196266 OR10J3 olfactory receptor family 10 subfamily J member 3 2.3219 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000240068 RPL21P42 ribosomal protein L21 pseudogene 42 -2.0000 0.3838
63172 ENSG00000240002 YBX1P3 Y-box binding protein 1 pseudogene 3 -2.0000 1.0000
63171 ENSG00000239992 TRBVA T cell receptor beta variable A (pseudogene) -2.0000 1.0000
63170 ENSG00000239805 proteasome (prosome, macropain) assembly chaperone 3 (PSMG3) pseudogene -2.0000 1.0000
63169 ENSG00000239263 RBM43P1 RNA binding motif protein 43 pseudogene 1 -2.0000 1.0000
63168 ENSG00000239205 LINC02023 long intergenic non-protein coding RNA 2023 -2.0000 1.0000
63167 ENSG00000239039 SNORD13 small nucleolar RNA, C/D box 13 -2.0000 1.0000
63166 ENSG00000238627 RNA5SP489 RNA, 5S ribosomal pseudogene 489 -2.0000 1.0000
63165 ENSG00000238570 NA -2.0000 1.0000
63164 ENSG00000238183 RPS27P5 ribosomal protein S27 pseudogene 5 -2.0000 1.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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