Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773624

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773624


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M251Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252620 RNU6ATAC24P RNA, U6atac small nuclear 24, pseudogene 2.1377 0.0000
2 ENSG00000230009 MTCO2P3 MT-CO2 pseudogene 3 2.0000 0.0030
3 ENSG00000260335 coronin, actin binding protein, 1A (CORO1A) pseudogene 2.0000 0.0030
4 ENSG00000266289 novel transcript 2.0000 0.0030
5 ENSG00000270708 GABA(A) receptor-associated protein-like 2 (GABARAPL2) pseudogene 1.9124 0.0000
6 ENSG00000259798 novel transcript HYDIN 1.8813 0.0000
7 ENSG00000219757 pseudogene similar to part of heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kD) HNRPD 1.8340 0.0000
8 ENSG00000207399 RNU6-1011P RNA, U6 small nuclear 1011, pseudogene 1.7925 0.0001
9 ENSG00000232959 novel transcript 1.7925 0.0001
10 ENSG00000254957 activating transcription factor 7 interacting protein 2 (ATF7IP2) pseudogene 1.7925 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000259831 LINC00567 long intergenic non-protein coding RNA 567 -2.0240 0.0000
63172 ENSG00000203727 SAMD5 sterile alpha motif domain containing 5 -2.0240 0.0000
63171 ENSG00000185963 BICD2 BICD cargo adaptor 2 -2.0239 0.0000
63170 ENSG00000272050 novel transcript -2.0237 0.0000
63169 ENSG00000183153 GJD3 gap junction protein delta 3 -2.0236 0.0000
63168 ENSG00000211770 TRBJ2-6 T cell receptor beta joining 2-6 -2.0235 0.0000
63167 ENSG00000248714 novel transcript -2.0235 0.0000
63166 ENSG00000219438 TAFA5 TAFA chemokine like family member 5 -2.0221 0.0000
63165 ENSG00000261480 novel transcript -2.0217 0.0000
63164 ENSG00000115884 SDC1 syndecan 1 -2.0217 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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