Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773625

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773625


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M252Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224631 RPS27AP16 RPS27A pseudogene 16 2.3219 0.0001
2 ENSG00000253170 novel transcript 2.3219 0.0001
3 ENSG00000258214 novel transcript 2.3219 0.0000
4 ENSG00000260662 CDGSH iron sulfur domain 2 (CISD2) pseudogene 2.3219 0.0001
5 ENSG00000261541 novel transcript 2.3219 0.0001
6 ENSG00000199378 Y RNA 2.0000 0.0012
7 ENSG00000201980 Small nucleolar RNA SNORA62/SNORA6 family 2.0000 0.0012
8 ENSG00000206719 Y RNA 2.0000 0.0000
9 ENSG00000207873 MIR513A1 microRNA 513a-1 2.0000 0.0012
10 ENSG00000222650 RNU2-70P RNA, U2 small nuclear 70, pseudogene 2.0000 0.0012

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000253744 novel transcript -1.9694 0.0000
63171 ENSG00000266248 novel transcript, antisense to VSTM2B -1.9691 0.0000
63170 ENSG00000201925 RNA5S15 RNA, 5S ribosomal 15 -1.9688 0.0000
63169 ENSG00000233656 novel transcript -1.9687 0.0000
63168 ENSG00000142507 PSMB6 proteasome 20S subunit beta 6 -1.9687 0.0000
63167 ENSG00000096060 FKBP5 FKBP prolyl isomerase 5 -1.9687 0.0000
63166 ENSG00000184068 SREBF2-AS1 SREBF2 antisense RNA 1 -1.9683 0.0000
63165 ENSG00000260011 novel transcript -1.9681 0.0000
63164 ENSG00000110536 PTPMT1 protein tyrosine phosphatase mitochondrial 1 -1.9676 0.0000
10 ENSG00000222650 RNU2-70P RNA, U2 small nuclear 70, pseudogene 2.0000 0.0012

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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