Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773626

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773626


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M253Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229275 novel transcript 3.5850 0.0000
2 ENSG00000207156 RNU6-505P RNA, U6 small nuclear 505, pseudogene 3.4594 0.0000
3 ENSG00000256563 NANOGNBP2 NANOGNB pseudogene 2 3.3336 0.0000
4 ENSG00000114853 ZBTB47 zinc finger and BTB domain containing 47 3.3219 0.0000
5 ENSG00000256897 novel transcript 3.2664 0.0000
6 ENSG00000221023 RNU6ATAC19P RNA, U6atac small nuclear 19, pseudogene 3.1699 0.0000
7 ENSG00000154124 OTULIN OTU deubiquitinase with linear linkage specificity 3.1427 0.0000
8 ENSG00000187268 FAM9C family with sequence similarity 9 member C 3.0000 0.0000
9 ENSG00000216710 COX6A1P3 cytochrome c oxidase subunit 6A1 pseudogene 3 3.0000 0.0000
10 ENSG00000232675 novel transcript, antisense to SLC24A3 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000183309 ZNF623 zinc finger protein 623 -2.2414 0.2474
63172 ENSG00000106125 MINDY4 MINDY lysine 48 deubiquitinase 4 -2.2412 0.0000
63171 ENSG00000254902 ANO1-AS1 ANO1 antisense RNA 1 -2.2403 0.0000
63170 ENSG00000267368 UPK3BL1 uroplakin 3B like 1 -2.2399 0.0000
63169 ENSG00000205236 novel protein, UPK3BL-RASA4 readthrough -2.2399 0.0000
63168 ENSG00000175877 TMEM270 transmembrane protein 270 -2.2391 0.0000
63167 ENSG00000264233 MIR4456 microRNA 4456 -2.2387 0.0000
63166 ENSG00000233354 LINC00028 long intergenic non-protein coding RNA 28 -2.2382 0.0000
63165 ENSG00000152422 XRCC4 X-ray repair cross complementing 4 -2.2378 0.0000
63164 ENSG00000140262 TCF12 transcription factor 12 -2.2376 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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