Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773627

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773627


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M254Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000116194 ANGPTL1 angiopoietin like 1 2.5850 0.0000
2 ENSG00000206678 RNU6-144P RNA, U6 small nuclear 144, pseudogene 2.3510 0.0000
3 ENSG00000272732 novel transcript 2.3219 0.0000
4 ENSG00000238311 SNORD13E small nucleolar RNA, C/D box 13E 2.0000 0.0018
5 ENSG00000252723 RNU6-677P RNA, U6 small nuclear 677, pseudogene 2.0000 0.0000
6 ENSG00000261213 novel transcript 2.0000 0.0018
7 ENSG00000277130 novel transcript, antisense to PPP1R12A 2.0000 0.0018
8 ENSG00000206733 RNU6-641P RNA, U6 small nuclear 641, pseudogene 1.8617 0.0000
9 ENSG00000260433 LINC01917 long intergenic non-protein coding RNA 1917 1.7233 0.0000
10 ENSG00000244389 RN7SL242P RNA, 7SL, cytoplasmic 242, pseudogene 1.6610 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000175611 LINC00476 long intergenic non-protein coding RNA 476 -1.9355 0.0000
63172 ENSG00000233708 epidermodysplasia verruciformis 1 (EVER1) pseudogene -1.9352 0.0000
63171 ENSG00000232642 novel transcript -1.9348 0.0000
63170 ENSG00000266680 novel transcript, antisense to PTP4A1 -1.9345 0.0000
63169 ENSG00000267498 uncharacterized LOC105372352 -1.9344 0.0000
63168 ENSG00000169021 UQCRFS1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 -1.9344 0.0000
63167 ENSG00000117281 CD160 CD160 molecule -1.9342 0.0000
63166 ENSG00000237854 LINC00674 long intergenic non-protein coding RNA 674 -1.9341 0.0000
63165 ENSG00000229848 novel transcript, antisense to ACTG1 -1.9339 0.0000
63164 ENSG00000139318 DUSP6 dual specificity phosphatase 6 -1.9335 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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