Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773628

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773628


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M255Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000279707 TEC 2.8074 0.0000
2 ENSG00000272632 novel transcript 2.5646 0.0000
3 ENSG00000279595 TEC 2.3219 0.0003
4 ENSG00000250219 LTV1P1 LTV1 ribosome biogenesis factor pseudogene 1 2.1610 0.0000
5 ENSG00000242121 RN7SL267P RNA, 7SL, cytoplasmic 267, pseudogene 2.1073 0.0000
6 ENSG00000212199 RNU6-127P RNA, U6 small nuclear 127, pseudogene 2.0000 0.0000
7 ENSG00000252537 NA 2.0000 0.0020
8 ENSG00000264699 LINC01912 long intergenic non-protein coding RNA 1912 2.0000 0.0020
9 ENSG00000278873 uncharacterized LOC100133319 1.8461 0.0000
10 ENSG00000242412 DBIL5P2 diazepam binding inhibitor-like 5 pseudogene 2 1.7290 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000278107 novel transcript -2.0166 0.0000
63172 ENSG00000006377 DLX6 distal-less homeobox 6 -2.0165 0.0000
63171 ENSG00000265392 MIR4252 microRNA 4252 -2.0164 0.0000
63170 ENSG00000164736 SOX17 SRY-box transcription factor 17 -2.0162 0.0000
63169 ENSG00000169018 FEM1B fem-1 homolog B -2.0160 0.0000
63168 ENSG00000164112 TMEM155 transmembrane protein 155 -2.0158 0.0000
63167 ENSG00000214518 KRTAP2-2 keratin associated protein 2-2 -2.0155 0.0000
63166 ENSG00000273271 novel transcript, antisense to SOD1 -2.0154 0.0000
63164 ENSG00000148156 ACTL7B actin like 7B -2.0151 0.0000
10 ENSG00000242412 DBIL5P2 diazepam binding inhibitor-like 5 pseudogene 2 1.7290 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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