Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773629

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773629


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M256Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000248583 ankyrin repeat domain family (ANKRD) pseudogene 2.3219 0.0004
2 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.1642 0.0000
3 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.1551 0.0000
4 ENSG00000228901 HMGN2P36 high mobility group nucleosomal binding domain 2 pseudogene 36 2.0575 0.0000
5 ENSG00000230457 PA2G4P4 proliferation-associated 2G4 pseudogene 4 2.0219 0.0000
6 ENSG00000165246 NLGN4Y neuroligin 4 Y-linked 2.0000 0.0000
7 ENSG00000217643 PTGES3P2 prostaglandin E synthase 3 pseudogene 2 2.0000 0.0000
8 ENSG00000224498 MAPKAPK5P1 MAPKAPK5 pseudogene 1 2.0000 0.0028
9 ENSG00000241667 novel transcript 2.0000 0.0028
10 ENSG00000251585 ash2 (absent, small, or homeotic)-like (Drosophila) (ASH2L) pseudogene 2.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000268744 novel transcript -2.0937 0.0000
63172 ENSG00000182170 MRGPRG MAS related GPR family member G -2.0935 0.0000
63171 ENSG00000102302 FGD1 FYVE, RhoGEF and PH domain containing 1 -2.0935 0.0000
63170 ENSG00000169740 ZNF32 zinc finger protein 32 -2.0924 0.0000
63169 ENSG00000234614 C2CD4D-AS1 C2CD4D and THEM5 antisense RNA 1 -2.0916 0.0000
63168 ENSG00000201134 Y RNA -2.0916 0.0000
63167 ENSG00000272236 novel transcript -2.0914 0.0000
63166 ENSG00000277099 FAM166A, pseudogene -2.0910 0.0000
63165 ENSG00000245848 CEBPA CCAAT enhancer binding protein alpha -2.0910 0.0000
63164 ENSG00000183929 DUSP5P1 dual specificity phosphatase 5 pseudogene 1 -2.0909 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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