Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773630

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773630


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M257Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000252524 Y RNA 2.3219 0.0003
2 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 2.1333 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.0322 0.0000
4 ENSG00000228837 CBX3P6 chromobox 3 pseudogene 6 2.0000 0.0020
5 ENSG00000233907 LINC01761 long intergenic non-protein coding RNA 1761 2.0000 0.0000
6 ENSG00000234384 LINC01049 long intergenic non-protein coding RNA 1049 2.0000 0.0020
7 ENSG00000240327 RN7SL93P RNA, 7SL, cytoplasmic 93, pseudogene 2.0000 0.0020
8 ENSG00000271508 ribosomal protein S2 (RPS2) pseudogene 2.0000 0.0000
9 ENSG00000235945 novel pseudogene 1.9534 0.0000
10 ENSG00000236359 OR51B8P olfactory receptor family 51 subfamily B member 8 pseudogene 1.8716 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000162040 HS3ST6 heparan sulfate-glucosamine 3-sulfotransferase 6 -2.1100 0.0000
63172 ENSG00000159110 IFNAR2 interferon alpha and beta receptor subunit 2 -2.1097 0.0000
63171 ENSG00000266970 novel transcript -2.1097 0.0000
63170 ENSG00000104848 KCNA7 potassium voltage-gated channel subfamily A member 7 -2.1096 0.0000
63169 ENSG00000222532 MIR1468 microRNA 1468 -2.1091 0.0000
63168 ENSG00000153246 PLA2R1 phospholipase A2 receptor 1 -2.1091 0.0000
63167 ENSG00000168811 IL12A interleukin 12A -2.1090 0.0000
63166 ENSG00000175164 ABO ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase -2.1090 0.0000
63165 ENSG00000080819 CPOX coproporphyrinogen oxidase -2.1089 0.0000
63164 ENSG00000066583 ISOC1 isochorismatase domain containing 1 -2.1086 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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