Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773631

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773631


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M258Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000234950 RBMY2OP RNA binding motif protein Y-linked family 2 member O, pseudogene 2.3219 0.0004
2 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.0454 0.0000
3 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 1.9450 0.0000
4 ENSG00000202034 RNU6-399P RNA, U6 small nuclear 399, pseudogene 1.6667 0.0000
5 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 1.6228 0.0000
6 ENSG00000186562 DEFB105A defensin beta 105A 1.5850 0.0004
7 ENSG00000186579 DEFB106A defensin beta 106A 1.5850 0.0004
8 ENSG00000206719 Y RNA 1.5850 0.0190
9 ENSG00000207139 Y RNA 1.5850 0.0190
10 ENSG00000212409 RNY4P18 RNY4 pseudogene 18 1.5850 0.0190

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000185837 HDHD5-AS1 HDHD5 antisense RNA 1 -2.0353 0.0000
63172 ENSG00000224980 RPL23AP85 ribosomal protein L23a pseudogene 85 -2.0351 0.0000
63171 ENSG00000182636 NDN necdin, MAGE family member -2.0346 0.0000
63170 ENSG00000259417 CTXND1 cortexin domain containing 1 -2.0346 0.0000
63169 ENSG00000236817 novel transcript -2.0345 0.0000
63168 ENSG00000283118 novel transcript, antisense to ZEB2 -2.0340 0.1516
63167 ENSG00000259148 YWHAZP1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 1 -2.0340 0.1516
63166 ENSG00000283204 MIR4434 microRNA 4434 -2.0336 0.0000
63165 ENSG00000240624 ribosomal protein L17 (RPL17) pseudogene -2.0335 0.0000
63164 ENSG00000141232 TOB1 transducer of ERBB2, 1 -2.0333 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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