Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773632

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773632


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M259Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000202225 RNA5SP240 RNA, 5S ribosomal pseudogene 240 2.8074 0.0000
2 ENSG00000270257 small EDRK-rich factor 2 (SERF2) pseudogene 2.6311 0.0000
3 ENSG00000273461 novel transcript 2.5850 0.0000
4 ENSG00000277448 LINC02338 long intergenic non-protein coding RNA 2338 2.5850 0.0000
5 ENSG00000283528 TCAF2C TRPM8 channel associated factor 2C 2.5850 0.0000
6 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 2.5222 0.0000
7 ENSG00000213046 EEF1A1P32 eukaryotic translation elongation factor 1 alpha 1 pseudogene 32 2.3219 0.0003
8 ENSG00000248987 PRDX4P1 peroxiredoxin 4 pseudogene 1 2.3219 0.0000
9 ENSG00000253334 novel transcript, antisense to SNX16 2.3219 0.0003
10 ENSG00000254437 cytochrome c oxidase subunit VIa polypeptide 1 (COX6A1) pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000243027 RN7SL354P RNA, 7SL, cytoplasmic 354, pseudogene -2.1184 0.0000
63172 ENSG00000185950 IRS2 insulin receptor substrate 2 -2.1183 0.0000
63171 ENSG00000116990 MYCL MYCL proto-oncogene, bHLH transcription factor -2.1176 0.0000
63170 ENSG00000176055 MBLAC2 metallo-beta-lactamase domain containing 2 -2.1176 0.0000
63169 ENSG00000164588 HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 -2.1174 0.0000
63168 ENSG00000197380 DACT3 dishevelled binding antagonist of beta catenin 3 -2.1173 0.0000
63167 ENSG00000237301 novel transcript -2.1173 0.0000
63166 ENSG00000230835 ribosomal protein S16 (RPS16) pseudogene -2.1171 0.0000
63165 ENSG00000215117 LINC00588 long intergenic non-protein coding RNA 588 -2.1170 0.0000
63164 ENSG00000284188 novel protein -2.1170 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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