Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773633

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773633


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M260Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000231615 novel pseudogene 3.1699 0.0000
2 ENSG00000253539 novel transcript 3.0000 0.0000
3 ENSG00000257272 novel transcript 3.0000 0.0000
4 ENSG00000226253 MRPL35P3 mitochondrial ribosomal protein L35 pseudogene 3 2.8209 0.0000
5 ENSG00000232342 novel transcript 2.8209 0.0000
6 ENSG00000201676 Y RNA 2.8074 0.0000
7 ENSG00000241018 RCC2P5 regulator of chromosome condensation 2 pseudogene 5 2.8074 0.0000
8 ENSG00000261158 novel transcript, antisense to CPPED1 2.8074 0.0000
9 ENSG00000197919 IFNA1 interferon alpha 1 2.5850 0.0000
10 ENSG00000200033 RNU6-403P RNA, U6 small nuclear 403, pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000255495 novel transcript -1.7992 0.0001
63172 ENSG00000101417 PXMP4 peroxisomal membrane protein 4 -1.7989 0.0000
63171 ENSG00000207264 RNU6-15P RNA, U6 small nuclear 15, pseudogene -1.7987 0.0042
63170 ENSG00000229213 microtubule-actin crosslinking factor 1 (MACF1) pseudogene -1.7987 0.0000
63169 ENSG00000259768 novel transcript, antisense to ZFHX3 -1.7984 0.0000
63168 ENSG00000238731 RNU7-90P RNA, U7 small nuclear 90 pseudogene -1.7984 0.0000
63167 ENSG00000118434 SPACA1 sperm acrosome associated 1 -1.7980 0.0097
63166 ENSG00000256797 KLRF2 killer cell lectin like receptor F2 -1.7979 0.0004
63165 ENSG00000140280 LYSMD2 LysM domain containing 2 -1.7976 0.0000
63164 ENSG00000256463 SALL3 spalt like transcription factor 3 -1.7968 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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