Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773634

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773634


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M261Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000166664 CHRFAM7A CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion 2.5850 0.0000
2 ENSG00000259528 novel transcript, antisense to NEO1 2.5850 0.0000
3 ENSG00000263070 unc-51-like kinase 4 (C. elegans) (ULK4) pseudogene 2.5850 0.0000
4 ENSG00000201563 Y RNA 2.3219 0.0000
5 ENSG00000278462 novel transcript, sense intronic to LRCH1 2.3219 0.0003
6 ENSG00000230902 FAM204CP family with sequence similarity 204 member C, pseudogene 2.1610 0.0000
7 ENSG00000254931 MTATP6P15 MT-ATP6 pseudogene 15 2.0763 0.0000
8 ENSG00000255417 MTCO2P15 MT-CO2 pseudogene 15 2.0763 0.0000
9 ENSG00000270857 ubiquitin-conjugating enzyme E2 variant 2 (UBE2V2) pseudogene 2.0741 0.0000
10 ENSG00000150261 OR8K1 olfactory receptor family 8 subfamily K member 1 2.0000 0.0020

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000259761 novel transcript -2.0499 0.1015
63172 ENSG00000264947 MIR3181 microRNA 3181 -2.0493 0.0000
63171 ENSG00000241346 SNRPCP11 small nuclear ribonucleoprotein polypeptide C pseudogene 11 -2.0490 0.0282
63170 ENSG00000242485 MRPL20 mitochondrial ribosomal protein L20 -2.0485 0.0000
63169 ENSG00000249170 solute carrier family 35, member A4 (SLC35A4) pseudogene -2.0485 0.0010
63168 ENSG00000080493 SLC4A4 solute carrier family 4 member 4 -2.0484 0.0000
63167 ENSG00000177685 CRACR2B calcium release activated channel regulator 2B -2.0480 0.0000
63166 ENSG00000244513 novel transcript -2.0474 0.0000
63165 ENSG00000188620 HMX3 H6 family homeobox 3 -2.0472 0.0000
63164 ENSG00000175229 GAL3ST3 galactose-3-O-sulfotransferase 3 -2.0469 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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