Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773635

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773635


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M262Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000280136 novel transcript 3.0567 0.0000
2 ENSG00000271652 chromosome X open reading frame 40A (CXorf40A) pseudogene 3.0000 0.0000
3 ENSG00000229257 novel transcript, antisense to SAPCD2 2.9818 0.0000
4 ENSG00000232835 novel transcript 2.8738 0.0000
5 ENSG00000274383 novel transcript, antisense to ANKDD1A 2.6860 0.0000
6 ENSG00000275332 novel transcript, antisense to ANKDD1A 2.6860 0.0000
7 ENSG00000279439 TEC 2.6346 0.0000
8 ENSG00000199735 RNU6-227P RNA, U6 small nuclear 227, pseudogene 2.6290 0.0000
9 ENSG00000188656 TSPY7P testis specific protein Y-linked 7, pseudogene 2.5850 0.0217
10 ENSG00000222145 Small nucleolar RNA SNORA73 family 2.5850 0.0005

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000264007 novel transcript -1.3606 0.0000
63172 ENSG00000143434 SEMA6C semaphorin 6C -1.3600 0.0000
63171 ENSG00000213722 DDAH2 dimethylarginine dimethylaminohydrolase 2 -1.3592 0.0000
63170 ENSG00000197253 TPSB2 tryptase beta 2 -1.3587 0.0000
63169 ENSG00000278416 PMS2P2 PMS1 homolog 2, mismatch repair system component pseudogene 2 -1.3585 0.0000
63168 ENSG00000080224 EPHA6 EPH receptor A6 -1.3580 0.0000
63167 ENSG00000165655 ZNF503 zinc finger protein 503 -1.3574 0.0000
63166 ENSG00000258712 CXADRP2 CXADR pseudogene 2 -1.3573 0.0000
63165 ENSG00000149243 KLHL35 kelch like family member 35 -1.3572 0.0000
63164 ENSG00000264408 MIR4470 microRNA 4470 -1.3571 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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