Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773636

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773636


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M263Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000274973 BSNDP2 BSND pseudogene 2 3.1699 0.0000
2 ENSG00000197713 RPE ribulose-5-phosphate-3-epimerase 3.1143 0.0000
3 ENSG00000224083 MTCO1P11 MT-CO1 pseudogene 11 3.0000 0.0000
4 ENSG00000228166 MTND1P11 MT-ND1 pseudogene 11 3.0000 0.0000
5 ENSG00000260088 DDX59-AS1 DDX59 antisense RNA 1 3.0000 0.0000
6 ENSG00000271249 DIMT1P1 DIM1 dimethyladenosine transferase 1 homolog pseudogene 1 2.8074 0.0000
7 ENSG00000274755 U2 spliceosomal RNA 2.6958 0.0000
8 ENSG00000221783 MIR1183 microRNA 1183 2.6779 0.0000
9 ENSG00000228625 novel transcript 2.5850 0.0001
10 ENSG00000251888 RN7SKP190 RN7SK pseudogene 190 2.5850 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000168135 KCNJ4 potassium inwardly rectifying channel subfamily J member 4 -2.3279 0.0000
63172 ENSG00000243959 RN7SL684P RNA, 7SL, cytoplasmic 684, pseudogene -2.3278 0.0000
63171 ENSG00000154478 GPR26 G protein-coupled receptor 26 -2.3269 0.0000
63170 ENSG00000108813 DLX4 distal-less homeobox 4 -2.3269 0.0000
63169 ENSG00000259011 novel transcript -2.3266 0.0000
63168 ENSG00000229043 ZFAND2A-DT ZFAND2A divergent transcript -2.3262 0.0000
63167 ENSG00000205293 LINC01602 long intergenic non-protein coding RNA 1602 -2.3258 0.2375
63166 ENSG00000085719 CPNE3 copine 3 -2.3248 0.0001
63165 ENSG00000273988 chromosome X open reading frame 48 (CXorf48) pseudogene -2.3244 0.0000
63164 ENSG00000102780 DGKH diacylglycerol kinase eta -2.3241 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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