Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773637

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773637


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M264Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000222357 RNU2-20P RNA, U2 small nuclear 20, pseudogene 3.0000 0.0000
2 ENSG00000218418 Rho GTPase activating protein 21 (ARHGAP21) pseudogene 2.8074 0.0000
3 ENSG00000229111 MED4-AS1 MED4 antisense RNA 1 2.8074 0.0000
4 ENSG00000229486 nuclear factor (eythroid-derived 2)-like 2 (NFE2L2) pseudogene 2.8074 0.0000
6 ENSG00000273609 leucine rich repeat containing 37B (LRRC37B) pseudogene 2.8074 0.0000
7 ENSG00000226366 CCDC12P1 CCDC12 pseudogene 1 2.6610 0.0000
8 ENSG00000201825 RNU6-1131P RNA, U6 small nuclear 1131, pseudogene 2.5850 0.0000
9 ENSG00000221456 MIR1202 microRNA 1202 2.5850 0.0000
10 ENSG00000223136 RN7SKP207 RN7SK pseudogene 207 2.5850 0.0000
63164 ENSG00000271151 novel transcript -2.2727 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000201436 RNU6-660P RNA, U6 small nuclear 660, pseudogene -2.2760 0.0000
63172 ENSG00000252068 RNU6-390P RNA, U6 small nuclear 390, pseudogene -2.2760 0.0000
63171 ENSG00000185818 NAT8L N-acetyltransferase 8 like -2.2758 0.0000
63170 ENSG00000247675 LRP4-AS1 LRP4 antisense RNA 1 -2.2749 0.0000
63169 ENSG00000276092 novel transcript, sense intronic to CCDC102B -2.2746 0.0000
63168 ENSG00000239264 TXNDC5 thioredoxin domain containing 5 -2.2738 0.0000
63167 ENSG00000265688 MAFG-DT MAFG divergent transcript -2.2733 0.0000
63166 ENSG00000233492 novel transcript -2.2729 0.0000
63165 ENSG00000123965 PMS2P5 PMS1 homolog 2, mismatch repair system component pseudogene 5 -2.2728 0.0000
63164 ENSG00000271151 novel transcript -2.2727 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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