Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773638

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773638


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M265Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000274128 novel transcript, sense intronic to ADAMTSL3 3.4594 0.0000
2 ENSG00000235378 MRPS10P1 mitochondrial ribosomal protein S10 pseudogene 1 3.0000 0.0000
3 ENSG00000271156 novel transcript 2.8074 0.0000
4 ENSG00000127364 TAS2R4 taste 2 receptor member 4 2.5850 0.0000
5 ENSG00000216740 ANXA2P3 annexin A2 pseudogene 3 2.5850 0.0000
6 ENSG00000248984 novel transcript 2.5850 0.0000
7 ENSG00000250082 DENN/MADD domain containing 3 (DENND3) pseudogene 2.5850 0.0000
8 ENSG00000258387 Rho GTPase activating protein 17 (ARHGAP17) pseudogene 2.5850 0.0000
9 ENSG00000258556 LINC02322 long intergenic non-protein coding RNA 2322 2.5850 0.0000
10 ENSG00000258894 ARHGAP16P Rho GTPase activating protein 16 pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000206142 FAM230H family with sequence similarity 230 member H -2.1786 0.0000
63172 ENSG00000162878 PKDCC protein kinase domain containing, cytoplasmic -2.1777 0.0000
63171 ENSG00000258457 novel transcript, antisense to C14orf93 -2.1777 0.0000
63170 ENSG00000225463 ZNF70P1 zinc finger protein 70 pseudogene 1 -2.1775 0.0000
63169 ENSG00000274499 coxsackie virus and adenovirus receptor (CXADR) pseudogene -2.1769 0.0000
63168 ENSG00000250976 novel transcript -2.1764 0.0000
63167 ENSG00000202474 RNA5SP283 RNA, 5S ribosomal pseudogene 283 -2.1751 0.0000
63166 ENSG00000182759 MAFA MAF bZIP transcription factor A -2.1743 0.0000
63165 ENSG00000238280 novel transcript -2.1733 0.0000
63164 ENSG00000264215 novel transcript -2.1732 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...