Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773639

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773639


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M266Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223409 RPL17P17 ribosomal protein L17 pseudogene 17 2.8074 0.0000
2 ENSG00000256981 taste receptor, type 2, member 18 pseudogene 2.8074 0.0000
3 ENSG00000217624 YWHAZP10 YWHAZ pseudogene 10 2.5850 0.0000
4 ENSG00000229221 HNRNPA1P66 heterogeneous nuclear ribonucleoprotein A1 pseudogene 66 2.5850 0.0000
5 ENSG00000279780 novel transcript 2.5850 0.0000
6 ENSG00000231519 novel transcript 2.4534 0.0000
7 ENSG00000274640 SNORD109A small nucleolar RNA, C/D box 109A 2.4466 0.0000
8 ENSG00000234767 LINC01052 long intergenic non-protein coding RNA 1052 2.3219 0.0002
9 ENSG00000260686 novel transcript, overlapping SNX2 2.3219 0.0000
10 ENSG00000267112 novel transcript, antisense to RAB27B 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000137055 PLAA phospholipase A2 activating protein -2.2051 0.0001
63172 ENSG00000197860 SGTB small glutamine rich tetratricopeptide repeat containing beta -2.2049 0.0000
63171 ENSG00000119138 KLF9 Kruppel like factor 9 -2.2048 0.0000
63170 ENSG00000246331 novel transcript -2.2039 0.0000
63169 ENSG00000254201 novel transcript -2.2036 0.0000
63168 ENSG00000265781 novel transcript -2.2034 0.0448
63167 ENSG00000056736 IL17RB interleukin 17 receptor B -2.2027 0.0000
63166 ENSG00000231530 novel transcript -2.2024 0.0000
63165 ENSG00000171189 GRIK1 glutamate ionotropic receptor kainate type subunit 1 -2.2024 0.0000
63164 ENSG00000266709 novel transcript -2.2022 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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