Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773640

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773640


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M267Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000263514 MIR3668 microRNA 3668 2.5850 0.0000
2 ENSG00000280881 novel transcript 2.5850 0.0000
3 ENSG00000200683 RNU6-379P RNA, U6 small nuclear 379, pseudogene 2.3219 0.0000
4 ENSG00000203506 RBMS3-AS2 RBMS3 antisense RNA 2 2.3219 0.0001
5 ENSG00000228777 LINC02534 long intergenic non-protein coding RNA 2534 2.3219 0.0001
6 ENSG00000240241 novel transcript 2.3219 0.0001
8 ENSG00000261807 LINC02141 long intergenic non-protein coding RNA 2141 2.3219 0.0001
9 ENSG00000265735 RN7SL5P RNA, 7SL, cytoplasmic 5, pseudogene 2.3219 0.0001
10 ENSG00000269986 novel transcript 2.3219 0.0001
63164 ENSG00000004142 POLDIP2 DNA polymerase delta interacting protein 2 -2.1196 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000274606 NA -2.1224 0.0000
63172 ENSG00000180581 SRP9P1 signal recognition particle 9 pseudogene 1 -2.1218 0.0000
63171 ENSG00000226501 USF1P1 upstream transcription factor 1 pseudogene 1 -2.1214 0.0000
63170 ENSG00000164742 ADCY1 adenylate cyclase 1 -2.1214 0.0000
63169 ENSG00000253706 novel transcript, antisense to PI15 -2.1205 0.0000
63168 ENSG00000164022 AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 -2.1202 0.0014
63167 ENSG00000153485 TMEM251 transmembrane protein 251 -2.1201 0.0000
63166 ENSG00000132825 PPP1R3D protein phosphatase 1 regulatory subunit 3D -2.1200 0.0000
63165 ENSG00000277459 novel transcript -2.1199 0.0000
63164 ENSG00000004142 POLDIP2 DNA polymerase delta interacting protein 2 -2.1196 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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