Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773641

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773641


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M268Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000224437 PIGUP1 phosphatidylinositol glycan anchor biosynthesis class U pseudogene 1 2.5850 0.0000
2 ENSG00000252263 RNU6-659P RNA, U6 small nuclear 659, pseudogene 2.5850 0.0000
3 ENSG00000266110 MIR4423 microRNA 4423 2.5850 0.0000
4 ENSG00000223087 RNU6-602P RNA, U6 small nuclear 602, pseudogene 2.4534 0.0000
5 ENSG00000226066 ZP3P2 ZP3 pseudogene 2 2.3219 0.0003
6 ENSG00000229910 HNRNPA1P18 heterogeneous nuclear ribonucleoprotein A1 pseudogene 18 2.3219 0.0003
7 ENSG00000242602 RPL35AP13 ribosomal protein L35a pseudogene 13 2.3219 0.0000
8 ENSG00000248769 POM121 membrane glycoprotein-like 1 (POM121L1) pseudogene 2.3219 0.0000
9 ENSG00000258162 novel transcript, antisense to PPFIA2 2.3219 0.0003
10 ENSG00000258567 DUX4L16 double homeobox 4 like 16 (pseudogene) 2.3219 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000254531 uncharacterized LOC90024 -2.0641 0.0000
63172 ENSG00000116406 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 -2.0641 0.0000
63171 ENSG00000241159 RN7SL160P RNA, 7SL, cytoplasmic 160, pseudogene -2.0637 0.0000
63170 ENSG00000279685 MAPT-IT1 MAPT intronic transcript 1 -2.0634 0.0000
63169 ENSG00000269427 novel transcript, antisense C19orf42 -2.0631 0.0000
63168 ENSG00000135801 TAF5L TATA-box binding protein associated factor 5 like -2.0629 0.0000
63167 ENSG00000101544 ADNP2 ADNP homeobox 2 -2.0614 0.0000
63166 ENSG00000165757 JCAD junctional cadherin 5 associated -2.0614 0.0000
63165 ENSG00000273709 U2 spliceosomal RNA -2.0609 0.0000
63164 ENSG00000239881 RPS27P25 ribosomal protein S27 pseudogene 25 -2.0607 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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