Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773643

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773643


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M270Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000083782 EPYC epiphycan 3.0000 0.0000
2 ENSG00000227011 LINC02876 long intergenic non-protein coding RNA 2876 2.5850 0.0000
3 ENSG00000238561 RNU6ATAC28P RNA, U6atac small nuclear 28, pseudogene 2.5850 0.0000
4 ENSG00000223208 RNU6-1217P RNA, U6 small nuclear 1217, pseudogene 2.3219 0.0000
5 ENSG00000227073 SDHDP2 succinate dehydrogenase complex subunit D pseudogene 2 2.3219 0.0002
6 ENSG00000230891 LINC00692 long intergenic non-protein coding RNA 692 2.3219 0.0000
7 ENSG00000230968 novel transcript 2.3219 0.0002
8 ENSG00000235303 novel transcript 2.2691 0.0000
9 ENSG00000227054 FDX1P2 ferredoxin 1 pseudogene 2 2.0888 0.0000
10 ENSG00000207874 MIR610 microRNA 610 2.0000 0.0016

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000232838 PET117 PET117 cytochrome c oxidase chaperone -2.1337 0.0000
63172 ENSG00000142700 DMRTA2 DMRT like family A2 -2.1334 0.0000
63171 ENSG00000224424 PRKAR2A-AS1 PRKAR2A antisense RNA 1 -2.1332 0.0000
63170 ENSG00000279009 TEC -2.1331 0.0000
63169 ENSG00000206190 ATP10A ATPase phospholipid transporting 10A (putative) -2.1330 0.0000
63168 ENSG00000188580 NKAIN2 sodium/potassium transporting ATPase interacting 2 -2.1326 0.0000
63167 ENSG00000280353 TEC -2.1320 0.0000
63166 ENSG00000279211 family with sequence similarity 182, member B (FAM182B) pseudogene -2.1318 0.0000
63165 ENSG00000128594 LRRC4 leucine rich repeat containing 4 -2.1317 0.0000
63164 ENSG00000270259 DSN1, MIND kinetochore complex component, homolog (S. cerevisiae) (DSN1) pseudogene -2.1316 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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