Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773644

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773644


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M271Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000275226 LINC00547 long intergenic non-protein coding RNA 547 3.3219 0.0000
2 ENSG00000252760 RNA5SP54 RNA, 5S ribosomal pseudogene 54 2.8074 0.0000
3 ENSG00000282327 pseudogene similar to part of glyceraldehyde-3-phosphate dehydrogenase GAPDH 2.8074 0.0000
4 ENSG00000229521 MYCBP2-AS2 MYCBP2 antisense RNA 2 2.7629 0.0000
5 ENSG00000224698 novel transcript 2.5850 0.0000
6 ENSG00000238118 SLC25A24P2 SLC25A24 pseudogene 2 2.5850 0.0000
7 ENSG00000238386 RNU7-48P RNA, U7 small nuclear 48 pseudogene 2.5850 0.0000
8 ENSG00000253994 NDUFB9P3 NADH:ubiquinone oxidoreductase subunit B9 pseudogene 3 2.5850 0.0000
9 ENSG00000207800 MIR504 microRNA 504 2.3219 0.0003
10 ENSG00000211789 TRAV12-2 T cell receptor alpha variable 12-2 2.3219 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000011198 ABHD5 abhydrolase domain containing 5, lysophosphatidic acid acyltransferase -2.0935 0.0000
63172 ENSG00000142700 DMRTA2 DMRT like family A2 -2.0935 0.0000
63171 ENSG00000188659 SAXO2 stabilizer of axonemal microtubules 2 -2.0934 0.0000
63170 ENSG00000130449 ZSWIM6 zinc finger SWIM-type containing 6 -2.0929 0.0000
63169 ENSG00000159713 TPPP3 tubulin polymerization promoting protein family member 3 -2.0928 0.0000
63168 ENSG00000224261 RPSAP18 ribosomal protein SA pseudogene 18 -2.0927 0.0000
63167 ENSG00000235047 novel transcript -2.0924 0.0291
63166 ENSG00000230174 LINC01149 long intergenic non-protein coding RNA 1149 -2.0921 0.0000
63165 ENSG00000154429 CCSAP centriole, cilia and spindle associated protein -2.0917 0.0000
63164 ENSG00000168748 CA7 carbonic anhydrase 7 -2.0914 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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